Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 AC006001.1-201ENST00000325130 474 ntBASIC19.54■□□□□ 0.72
NPHP1O15259 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
NPHP1O15259 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 MTX1P1-201ENST00000440904 838 ntBASIC19.54■□□□□ 0.72
NPHP1O15259 AL590640.2-201ENST00000457038 527 ntBASIC19.54■□□□□ 0.72
NPHP1O15259 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC19.54■□□□□ 0.72
NPHP1O15259 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC19.54■□□□□ 0.72
NPHP1O15259 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
NPHP1O15259 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
NPHP1O15259 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC19.54■□□□□ 0.72
NPHP1O15259 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPHP1O15259 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
NPHP1O15259 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 AC067930.6-201ENST00000623257 4947 ntBASIC19.53■□□□□ 0.72
NPHP1O15259 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NPHP1O15259 MPV17-205ENST00000402310 906 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP1O15259 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 CALR4P-201ENST00000431943 946 ntBASIC19.53■□□□□ 0.72
NPHP1O15259 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC19.53■□□□□ 0.72
NPHP1O15259 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP1O15259 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 ARL16-210ENST00000574938 751 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NPHP1O15259 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
NPHP1O15259 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP1O15259 AC006449.6-201ENST00000612330 2296 ntBASIC19.53■□□□□ 0.72
NPHP1O15259 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.53■□□□□ 0.72
NPHP1O15259 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 AL354989.2-201ENST00000435838 1540 ntBASIC19.52■□□□□ 0.72
NPHP1O15259 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 HOMER2P2-201ENST00000451621 847 ntBASIC19.52■□□□□ 0.72
NPHP1O15259 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
NPHP1O15259 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC19.52■□□□□ 0.72
NPHP1O15259 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP1O15259 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP1O15259 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
NPHP1O15259 AL138799.1-201ENST00000448213 1675 ntBASIC19.52■□□□□ 0.71
NPHP1O15259 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP1O15259 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP1O15259 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP1O15259 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP1O15259 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP1O15259 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP1O15259 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms