Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 AC099063.4-201ENST00000641099 1602 ntBASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
VPS29Q9UBQ0 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MIR600HG-201ENST00000449175 5984 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 FAM86GP-201ENST00000448322 971 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 AL158211.3-201ENST00000607385 239 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 LINC01101-201ENST00000622953 1884 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MYO15B-237ENST00000642007 4893 ntBASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
VPS29Q9UBQ0 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC138969.3-201ENST00000546612 1459 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC138932.2-201ENST00000548268 1459 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC126755.4-201ENST00000549796 1459 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 GHSR-202ENST00000427970 912 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 KRT18P43-201ENST00000469825 1281 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC097493.3-201ENST00000509725 367 ntBASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.89□□□□□ -0.03
VPS29Q9UBQ0 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms