Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TKT-201ENST00000296289 1931 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC079781.3-201ENST00000449110 356 ntBASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC093909.1-201ENST00000504731 1122 ntBASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC018845.2-201ENST00000568326 409 ntBASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 Z83851.2-201ENST00000609564 659 ntBASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 MIR600HG-201ENST00000449175 5984 ntBASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 SBF1P1-201ENST00000444527 5631 ntBASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 GHSR-202ENST00000427970 912 ntBASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28BQ9BUN5 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 HLA-H-201ENST00000383620 1096 ntBASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PDPK2P-202ENST00000562415 1191 ntBASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AC064836.3-201ENST00000607928 673 ntBASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28BQ9BUN5 CICP11-201ENST00000434745 2827 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms