Protein–RNA interactions for Protein: Q9BSH5

HDHD3, Haloacid dehalogenase-like hydrolase domain-containing protein 3, humanhuman

Predicted RBP Predictions only

Length 251 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3Q9BSH5 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HDHD3Q9BSH5 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HDHD3Q9BSH5 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HDHD3Q9BSH5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AC084364.1-201ENST00000551967 1556 ntBASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AC140479.7-201ENST00000636301 2332 ntBASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
HDHD3Q9BSH5 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 OR2I1P-209ENST00000641730 5365 ntBASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 ACE3P-201ENST00000423435 1973 ntBASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 AC026396.1-201ENST00000419388 421 ntBASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 GATB-205ENST00000508611 605 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 BANF1P1-201ENST00000553684 263 ntBASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.15□□□□□ -0.3
HDHD3Q9BSH5 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms