Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC022211.2-201ENST00000585075 2527 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC124067.4-201ENST00000519691 2379 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AL627231.1-201ENST00000394467 1125 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 POU5F1P2-201ENST00000521750 823 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC009084.3-201ENST00000623356 437 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 AC074138.1-201ENST00000611182 1303 ntBASIC20.69■□□□□ 0.9
NPHP3Q7Z494 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NPHP3Q7Z494 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SP100-205ENST00000409824 1802 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
NPHP3Q7Z494 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 RPL7P35-201ENST00000446943 740 ntBASIC20.67■□□□□ 0.9
NPHP3Q7Z494 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 STUB1-204ENST00000564370 875 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AL031713.1-201ENST00000564813 661 ntBASIC20.67■□□□□ 0.9
NPHP3Q7Z494 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AC138894.2-201ENST00000602838 371 ntBASIC20.67■□□□□ 0.9
NPHP3Q7Z494 MIR6842-201ENST00000612539 65 ntBASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AC242376.2-201ENST00000619355 883 ntBASIC20.67■□□□□ 0.9
NPHP3Q7Z494 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
NPHP3Q7Z494 AMT-204ENST00000427987 1646 ntTSL 5 BASIC20.66■□□□□ 0.9
NPHP3Q7Z494 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms