Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC022211.2-201ENST00000585075 2527 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC069224.1-201ENST00000566372 1715 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 FTLP10-202ENST00000505798 471 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 AP003171.2-201ENST00000528208 925 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC013355.1-201ENST00000562625 723 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 MIR3907-201ENST00000579424 151 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 SPCS2P2-201ENST00000603270 608 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 AL645939.5-201ENST00000606834 243 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AGGF1P2-201ENST00000426656 2106 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
LYSMD4Q5XG99 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.07■□□□□ 0
LYSMD4Q5XG99 AC084364.1-201ENST00000551967 1556 ntBASIC15.07■□□□□ 0
LYSMD4Q5XG99 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 MIR33B-201ENST00000385104 96 ntBASIC15.06■□□□□ 0
LYSMD4Q5XG99 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC024681.1-201ENST00000521917 487 ntBASIC15.06■□□□□ 0
LYSMD4Q5XG99 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.06■□□□□ 0
LYSMD4Q5XG99 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
LYSMD4Q5XG99 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.06■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms