Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 AC211486.1-202ENST00000416371 468 ntBASIC15.04■□□□□ -0
FOXA1P55317 UPF3AP3-201ENST00000420996 769 ntBASIC15.04■□□□□ -0
FOXA1P55317 BX842568.4-201ENST00000421222 227 ntBASIC15.04■□□□□ -0
FOXA1P55317 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.04■□□□□ -0
FOXA1P55317 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 AC211476.1-201ENST00000503899 468 ntBASIC15.04■□□□□ -0
FOXA1P55317 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.04■□□□□ -0
FOXA1P55317 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.04■□□□□ -0
FOXA1P55317 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 LINC01115-203ENST00000606068 577 ntBASIC15.04■□□□□ -0
FOXA1P55317 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC15.04■□□□□ -0
FOXA1P55317 LINC00628-201ENST00000628516 1289 ntBASIC15.04■□□□□ -0
FOXA1P55317 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
FOXA1P55317 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 CETN4P-206ENST00000642099 2168 ntBASIC15.03■□□□□ -0
FOXA1P55317 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.03■□□□□ -0
FOXA1P55317 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 AC027612.4-201ENST00000605371 583 ntBASIC15.03■□□□□ -0
FOXA1P55317 MIR6069-201ENST00000620069 79 ntBASIC15.03■□□□□ -0
FOXA1P55317 AL033527.5-202ENST00000641632 1098 ntBASIC15.03■□□□□ -0
FOXA1P55317 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.03■□□□□ -0
FOXA1P55317 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.03■□□□□ -0
FOXA1P55317 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
FOXA1P55317 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
FOXA1P55317 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.02■□□□□ -0
FOXA1P55317 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.02■□□□□ -0
FOXA1P55317 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
FOXA1P55317 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms