Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL4A4P53420 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.21■□□□□ 0.19
COL4A4P53420 ISCA2P1-201ENST00000425548 448 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 AC073150.1-201ENST00000450406 1084 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
COL4A4P53420 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC16.21■□□□□ 0.19
COL4A4P53420 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A4P53420 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 AC132192.2-201ENST00000596206 1147 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 AC025181.2-201ENST00000606994 802 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A4P53420 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.21■□□□□ 0.19
COL4A4P53420 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A4P53420 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.21■□□□□ 0.19
COL4A4P53420 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A4P53420 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC16.21■□□□□ 0.19
COL4A4P53420 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.21■□□□□ 0.19
COL4A4P53420 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
COL4A4P53420 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
COL4A4P53420 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A4P53420 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A4P53420 AC007787.1-201ENST00000588095 1583 ntBASIC16.21■□□□□ 0.18
COL4A4P53420 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A4P53420 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.21■□□□□ 0.18
COL4A4P53420 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A4P53420 RTN3P1-201ENST00000536295 711 ntBASIC16.21■□□□□ 0.18
COL4A4P53420 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
COL4A4P53420 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.21■□□□□ 0.18
COL4A4P53420 AC020922.3-201ENST00000595064 547 ntBASIC16.21■□□□□ 0.18
COL4A4P53420 AC073352.2-201ENST00000609385 439 ntBASIC16.21■□□□□ 0.18
COL4A4P53420 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
COL4A4P53420 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL4A4P53420 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A4P53420 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
COL4A4P53420 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
COL4A4P53420 KRT8P29-201ENST00000420409 1371 ntBASIC16.2■□□□□ 0.18
COL4A4P53420 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A4P53420 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A4P53420 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.2■□□□□ 0.18
COL4A4P53420 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.2■□□□□ 0.18
COL4A4P53420 RCC2P8-201ENST00000502779 1035 ntBASIC16.2■□□□□ 0.18
COL4A4P53420 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A4P53420 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.2■□□□□ 0.18
COL4A4P53420 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC16.2■□□□□ 0.18
COL4A4P53420 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL4A4P53420 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.2■□□□□ 0.18
COL4A4P53420 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL4A4P53420 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.19■□□□□ 0.18
COL4A4P53420 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.19■□□□□ 0.18
COL4A4P53420 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL4A4P53420 RN7SKP175-201ENST00000408472 289 ntBASIC16.19■□□□□ 0.18
COL4A4P53420 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.19■□□□□ 0.18
COL4A4P53420 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC16.19■□□□□ 0.18
COL4A4P53420 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms