Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.11■□□□□ 0.33
CENPFP49454 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CENPFP49454 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CENPFP49454 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.11■□□□□ 0.33
CENPFP49454 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
CENPFP49454 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.11■□□□□ 0.33
CENPFP49454 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.11■□□□□ 0.33
CENPFP49454 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.11■□□□□ 0.33
CENPFP49454 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CENPFP49454 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.11■□□□□ 0.33
CENPFP49454 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CENPFP49454 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 AC099398.1-201ENST00000567919 2776 ntBASIC17.1■□□□□ 0.33
CENPFP49454 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 HLA-J-204ENST00000495278 958 ntBASIC17.1■□□□□ 0.33
CENPFP49454 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.1■□□□□ 0.33
CENPFP49454 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC17.1■□□□□ 0.33
CENPFP49454 AC026803.1-201ENST00000569130 274 ntBASIC17.1■□□□□ 0.33
CENPFP49454 AC005632.3-201ENST00000605544 308 ntBASIC17.1■□□□□ 0.33
CENPFP49454 Z98259.2-201ENST00000641583 609 ntBASIC17.1■□□□□ 0.33
CENPFP49454 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 IL9RP3-201ENST00000442856 1674 ntBASIC17.1■□□□□ 0.33
CENPFP49454 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CENPFP49454 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC17.1■□□□□ 0.33
CENPFP49454 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CENPFP49454 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CENPFP49454 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC17.09■□□□□ 0.33
CENPFP49454 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC17.09■□□□□ 0.33
CENPFP49454 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.09■□□□□ 0.33
CENPFP49454 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CENPFP49454 AC130709.1-201ENST00000484779 1212 ntBASIC17.09■□□□□ 0.33
CENPFP49454 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.09■□□□□ 0.33
CENPFP49454 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 AC084018.2-201ENST00000613093 2607 ntBASIC17.09■□□□□ 0.33
CENPFP49454 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CENPFP49454 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.09■□□□□ 0.33
CENPFP49454 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC17.09■□□□□ 0.33
CENPFP49454 DDX39AP1-201ENST00000445147 1181 ntBASIC17.09■□□□□ 0.33
CENPFP49454 AC027237.1-201ENST00000560942 655 ntBASIC17.09■□□□□ 0.33
CENPFP49454 HKR1-225ENST00000592168 566 ntTSL 4 BASIC17.09■□□□□ 0.33
CENPFP49454 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CENPFP49454 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC17.09■□□□□ 0.33
CENPFP49454 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.08■□□□□ 0.33
CENPFP49454 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CENPFP49454 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CENPFP49454 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.08■□□□□ 0.33
CENPFP49454 MIR557-201ENST00000385239 98 ntBASIC17.08■□□□□ 0.33
CENPFP49454 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC17.08■□□□□ 0.33
CENPFP49454 AC008723.1-201ENST00000506922 207 ntBASIC17.08■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms