Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.36■□□□□ 0.21
LHX1P48742 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 AC244107.1-201ENST00000442033 332 ntBASIC16.36■□□□□ 0.21
LHX1P48742 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.36■□□□□ 0.21
LHX1P48742 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.36■□□□□ 0.21
LHX1P48742 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.36■□□□□ 0.21
LHX1P48742 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.36■□□□□ 0.21
LHX1P48742 MIR6805-201ENST00000615055 62 ntBASIC16.36■□□□□ 0.21
LHX1P48742 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.36■□□□□ 0.21
LHX1P48742 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.36■□□□□ 0.21
LHX1P48742 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 KRT8P35-201ENST00000483942 1338 ntBASIC16.36■□□□□ 0.21
LHX1P48742 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.36■□□□□ 0.21
LHX1P48742 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.36■□□□□ 0.21
LHX1P48742 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 TMBIM7P-203ENST00000641617 1718 ntBASIC16.36■□□□□ 0.21
LHX1P48742 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.36■□□□□ 0.21
LHX1P48742 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LHX1P48742 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LHX1P48742 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 AL158070.2-201ENST00000623713 1621 ntBASIC16.35■□□□□ 0.21
LHX1P48742 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 KLF2P2-201ENST00000416807 1039 ntBASIC16.35■□□□□ 0.21
LHX1P48742 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 CROCCP4-201ENST00000457096 498 ntBASIC16.35■□□□□ 0.21
LHX1P48742 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.35■□□□□ 0.21
LHX1P48742 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.35■□□□□ 0.21
LHX1P48742 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.35■□□□□ 0.21
LHX1P48742 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.35■□□□□ 0.21
LHX1P48742 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.35■□□□□ 0.21
LHX1P48742 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.35■□□□□ 0.21
LHX1P48742 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.35■□□□□ 0.21
LHX1P48742 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.35■□□□□ 0.21
LHX1P48742 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
LHX1P48742 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.35■□□□□ 0.21
LHX1P48742 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.35■□□□□ 0.21
LHX1P48742 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LHX1P48742 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LHX1P48742 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.34■□□□□ 0.21
LHX1P48742 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 RNU1-114P-201ENST00000365297 166 ntBASIC16.34■□□□□ 0.21
LHX1P48742 B9D1-203ENST00000395615 805 ntTSL 3 BASIC16.34■□□□□ 0.21
LHX1P48742 ACTBP8-201ENST00000403258 1108 ntBASIC16.34■□□□□ 0.21
LHX1P48742 AL139094.1-201ENST00000405549 1188 ntBASIC16.34■□□□□ 0.21
LHX1P48742 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.34■□□□□ 0.21
LHX1P48742 GHSR-202ENST00000427970 912 ntBASIC16.34■□□□□ 0.21
LHX1P48742 AC016694.1-201ENST00000434179 700 ntBASIC16.34■□□□□ 0.21
LHX1P48742 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
LHX1P48742 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.34■□□□□ 0.21
LHX1P48742 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LHX1P48742 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.34■□□□□ 0.21
LHX1P48742 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms