Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 AC087499.6-201ENST00000411576 835 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 VDAC1P7-201ENST00000462417 847 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 AC104596.2-201ENST00000512793 793 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 SAMD11P1-201ENST00000571429 661 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 AC107373.2-201ENST00000607735 490 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 MIR8072-201ENST00000614241 80 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 TCAF2P1-201ENST00000291129 2421 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 AGAP7P-201ENST00000582299 2062 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 AGAP14-201ENST00000624701 2060 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.1■□□□□ 0.17
PTPN9P43378 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
PTPN9P43378 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 REXO1L4P-201ENST00000605109 1937 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 AC023824.1-201ENST00000562945 2975 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.09■□□□□ 0.17
PTPN9P43378 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PTPN9P43378 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 AL442647.2-201ENST00000429864 857 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 HMGN1P19-201ENST00000436976 333 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.09■□□□□ 0.17
PTPN9P43378 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.09■□□□□ 0.17
PTPN9P43378 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 AC004066.1-201ENST00000502488 802 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 AC123567.1-201ENST00000548294 1261 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.09■□□□□ 0.17
PTPN9P43378 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.09■□□□□ 0.17
PTPN9P43378 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
PTPN9P43378 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 SERF2-217ENST00000630046 862 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 ZBED1P1-201ENST00000502364 1930 ntBASIC16.09■□□□□ 0.17
PTPN9P43378 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTPN9P43378 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
PTPN9P43378 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.09■□□□□ 0.17
PTPN9P43378 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms