Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 YRDCP1-201ENST00000621419 643 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 AC004923.1-202ENST00000642106 209 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
COL5A1P20908 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.56□□□□□ -0.08
COL5A1P20908 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.56□□□□□ -0.08
COL5A1P20908 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 AL355334.1-201ENST00000417713 215 ntBASIC14.56□□□□□ -0.08
COL5A1P20908 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC14.56□□□□□ -0.08
COL5A1P20908 AC069218.1-201ENST00000435269 762 ntBASIC14.56□□□□□ -0.08
COL5A1P20908 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.56□□□□□ -0.08
COL5A1P20908 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC14.56□□□□□ -0.08
COL5A1P20908 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 MIR7845-201ENST00000618396 99 ntBASIC14.56□□□□□ -0.08
COL5A1P20908 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.56□□□□□ -0.08
COL5A1P20908 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
COL5A1P20908 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
COL5A1P20908 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.56□□□□□ -0.08
COL5A1P20908 AL157791.1-201ENST00000553667 1699 ntBASIC14.56□□□□□ -0.08
COL5A1P20908 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 FKBP4P6-201ENST00000457486 1332 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 AC006480.2-201ENST00000609770 1337 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 AC105250.1-201ENST00000509378 2057 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC14.55□□□□□ -0.08
COL5A1P20908 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL5A1P20908 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.55□□□□□ -0.08
COL5A1P20908 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 RCC2P8-201ENST00000502779 1035 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.55□□□□□ -0.08
COL5A1P20908 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.55□□□□□ -0.08
COL5A1P20908 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 AL132994.2-201ENST00000603120 687 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL5A1P20908 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.55□□□□□ -0.08
COL5A1P20908 AC138696.2-201ENST00000607376 223 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 AL136301.1-201ENST00000615830 422 ntBASIC14.55□□□□□ -0.08
COL5A1P20908 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL5A1P20908 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.55□□□□□ -0.08
COL5A1P20908 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
COL5A1P20908 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.54□□□□□ -0.08
COL5A1P20908 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.54□□□□□ -0.08
COL5A1P20908 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL5A1P20908 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms