Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
APOBP04114 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 AL662844.4-201ENST00000606367 2838 ntBASIC9.38□□□□□ -0.91
APOBP04114 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
APOBP04114 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC9.38□□□□□ -0.91
APOBP04114 PCDHB19P-201ENST00000570871 2371 ntBASIC9.38□□□□□ -0.91
APOBP04114 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC9.38□□□□□ -0.91
APOBP04114 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
APOBP04114 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC9.38□□□□□ -0.91
APOBP04114 TPM1-223ENST00000560445 485 ntTSL 3 BASIC9.38□□□□□ -0.91
APOBP04114 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC9.38□□□□□ -0.91
APOBP04114 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 HCG27-204ENST00000424675 895 ntTSL 3 BASIC9.37□□□□□ -0.91
APOBP04114 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC9.37□□□□□ -0.91
APOBP04114 CD164-210ENST00000512821 964 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC9.37□□□□□ -0.91
APOBP04114 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC9.37□□□□□ -0.91
APOBP04114 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 LINC01815-202ENST00000641468 1409 ntBASIC9.37□□□□□ -0.91
APOBP04114 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 TNRC18P3-201ENST00000441896 2691 ntBASIC9.37□□□□□ -0.91
APOBP04114 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 SKA2-202ENST00000437036 625 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC9.37□□□□□ -0.91
APOBP04114 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC9.37□□□□□ -0.91
APOBP04114 AL139339.2-201ENST00000608063 657 ntBASIC9.37□□□□□ -0.91
APOBP04114 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC9.37□□□□□ -0.91
APOBP04114 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC9.37□□□□□ -0.91
APOBP04114 PGAM1P12-201ENST00000505622 748 ntBASIC9.37□□□□□ -0.91
APOBP04114 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 MBP-238ENST00000580402 915 ntTSL 5 BASIC9.37□□□□□ -0.91
APOBP04114 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
APOBP04114 LINC02199-201ENST00000506655 2702 ntBASIC9.37□□□□□ -0.91
APOBP04114 CYP4F23P-201ENST00000593402 1579 ntBASIC9.36□□□□□ -0.91
APOBP04114 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC9.36□□□□□ -0.91
APOBP04114 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC9.36□□□□□ -0.91
APOBP04114 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 GCSHP3-201ENST00000431120 391 ntBASIC9.36□□□□□ -0.91
APOBP04114 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 AC068867.1-201ENST00000559855 150 ntBASIC9.36□□□□□ -0.91
APOBP04114 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 API5-202ENST00000420461 2009 ntTSL 2 BASIC9.36□□□□□ -0.91
APOBP04114 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC9.36□□□□□ -0.91
APOBP04114 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC9.36□□□□□ -0.91
APOBP04114 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC9.36□□□□□ -0.91
APOBP04114 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC9.36□□□□□ -0.91
APOBP04114 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
APOBP04114 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC9.36□□□□□ -0.91
APOBP04114 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC9.36□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms