Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC21.25■□□□□ 0.99
NPHP4O75161 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
NPHP4O75161 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC21.25■□□□□ 0.99
NPHP4O75161 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NPHP4O75161 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.25■□□□□ 0.99
NPHP4O75161 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
NPHP4O75161 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 AC092638.2-201ENST00000441105 947 ntBASIC21.24■□□□□ 0.99
NPHP4O75161 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
NPHP4O75161 FAM86KP-201ENST00000509817 987 ntBASIC21.24■□□□□ 0.99
NPHP4O75161 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC21.24■□□□□ 0.99
NPHP4O75161 PLS3-210ENST00000626746 216 ntTSL 4 BASIC21.24■□□□□ 0.99
NPHP4O75161 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
NPHP4O75161 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP4O75161 TKT-202ENST00000423516 2075 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP4O75161 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
NPHP4O75161 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.24■□□□□ 0.99
NPHP4O75161 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NPHP4O75161 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC21.23■□□□□ 0.99
NPHP4O75161 TSPY25P-201ENST00000429463 745 ntBASIC21.23■□□□□ 0.99
NPHP4O75161 RPSAP15-201ENST00000448168 861 ntBASIC21.23■□□□□ 0.99
NPHP4O75161 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC21.23■□□□□ 0.99
NPHP4O75161 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC21.23■□□□□ 0.99
NPHP4O75161 AC007326.1-201ENST00000604539 458 ntBASIC21.23■□□□□ 0.99
NPHP4O75161 AC009560.1-201ENST00000620208 434 ntBASIC21.23■□□□□ 0.99
NPHP4O75161 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC21.23■□□□□ 0.99
NPHP4O75161 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 CYP4F23P-201ENST00000593402 1579 ntBASIC21.23■□□□□ 0.99
NPHP4O75161 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NPHP4O75161 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NPHP4O75161 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
NPHP4O75161 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP4O75161 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 ACTBP7-201ENST00000418351 1124 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 AL645933.1-201ENST00000440087 609 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 AC084752.1-201ENST00000509766 622 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 AP000911.2-201ENST00000534330 502 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC21.22■□□□□ 0.99
NPHP4O75161 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 AL138725.1-201ENST00000407347 1314 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP4O75161 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP4O75161 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC21.22■□□□□ 0.99
NPHP4O75161 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP4O75161 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NPHP4O75161 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 AC092171.3-201ENST00000610122 2651 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
NPHP4O75161 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 AL157414.3-201ENST00000624276 1954 ntBASIC21.22■□□□□ 0.99
NPHP4O75161 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
NPHP4O75161 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NPHP4O75161 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC21.21■□□□□ 0.99
NPHP4O75161 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms