Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.62□□□□□ -0.07
LDB3O75112 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.62□□□□□ -0.07
LDB3O75112 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LDB3O75112 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.62□□□□□ -0.07
LDB3O75112 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.62□□□□□ -0.07
LDB3O75112 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.62□□□□□ -0.07
LDB3O75112 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.62□□□□□ -0.07
LDB3O75112 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
LDB3O75112 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LDB3O75112 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LDB3O75112 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.62□□□□□ -0.07
LDB3O75112 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LDB3O75112 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 AL391825.1-201ENST00000457671 1364 ntBASIC14.61□□□□□ -0.07
LDB3O75112 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 AC098850.1-201ENST00000419919 790 ntBASIC14.61□□□□□ -0.07
LDB3O75112 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.61□□□□□ -0.07
LDB3O75112 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 RRP7BP-205ENST00000566851 833 ntBASIC14.61□□□□□ -0.07
LDB3O75112 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 MIR3197-201ENST00000582241 73 ntBASIC14.61□□□□□ -0.07
LDB3O75112 AC025181.2-201ENST00000606994 802 ntBASIC14.61□□□□□ -0.07
LDB3O75112 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.61□□□□□ -0.07
LDB3O75112 AC007431.3-201ENST00000623221 587 ntBASIC14.61□□□□□ -0.07
LDB3O75112 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.61□□□□□ -0.07
LDB3O75112 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.61□□□□□ -0.07
LDB3O75112 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LDB3O75112 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.61□□□□□ -0.07
LDB3O75112 AC022532.1-201ENST00000624563 1728 ntBASIC14.61□□□□□ -0.07
LDB3O75112 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 AC126177.1-201ENST00000547829 2218 ntBASIC14.6□□□□□ -0.07
LDB3O75112 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 AC087499.6-201ENST00000411576 835 ntBASIC14.6□□□□□ -0.07
LDB3O75112 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 AC104596.2-201ENST00000512793 793 ntBASIC14.6□□□□□ -0.07
LDB3O75112 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.6□□□□□ -0.07
LDB3O75112 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 AC093726.1-201ENST00000608064 963 ntBASIC14.6□□□□□ -0.07
LDB3O75112 AC099568.2-201ENST00000609194 695 ntBASIC14.6□□□□□ -0.07
LDB3O75112 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
LDB3O75112 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.6□□□□□ -0.07
LDB3O75112 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.6□□□□□ -0.07
LDB3O75112 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LDB3O75112 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms