Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 INE2-201ENST00000630399 1874 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
SHOX2O60902 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SHOX2O60902 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SHOX2O60902 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.56■□□□□ 0.08
SHOX2O60902 KRT17P5-203ENST00000445433 2333 ntTSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
SHOX2O60902 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
SHOX2O60902 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 USH1C-201ENST00000005226 2700 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 AL161772.1-201ENST00000610494 4412 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
SHOX2O60902 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 AMT-221ENST00000538581 2038 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 AC073439.1-201ENST00000624121 1774 ntBASIC15.55■□□□□ 0.08
SHOX2O60902 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.55■□□□□ 0.08
SHOX2O60902 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
SHOX2O60902 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.55■□□□□ 0.08
SHOX2O60902 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.55■□□□□ 0.08
SHOX2O60902 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 AP000550.4-202ENST00000639755 178 ntBASIC15.55■□□□□ 0.08
SHOX2O60902 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
SHOX2O60902 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.55■□□□□ 0.08
SHOX2O60902 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SHOX2O60902 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.54■□□□□ 0.08
SHOX2O60902 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.54■□□□□ 0.08
SHOX2O60902 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
SHOX2O60902 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 HMGA1P7-201ENST00000406908 502 ntBASIC15.54■□□□□ 0.08
SHOX2O60902 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.54■□□□□ 0.08
SHOX2O60902 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.54■□□□□ 0.08
SHOX2O60902 AL139288.1-201ENST00000623748 933 ntBASIC15.54■□□□□ 0.08
SHOX2O60902 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.54■□□□□ 0.08
SHOX2O60902 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
SHOX2O60902 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms