Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
PCDHA3Q9Y5H8 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 SPCS2P3-201ENST00000500401 656 ntBASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 AL592293.1-201ENST00000502889 1188 ntBASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHA3Q9Y5H8 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.29■■□□□ 1.48
PCDHA3Q9Y5H8 AC068473.5-201ENST00000616428 2072 ntBASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 AC012676.1-201ENST00000574705 1949 ntBASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 AC018755.3-202ENST00000596210 929 ntBASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHA3Q9Y5H8 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA3Q9Y5H8 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA3Q9Y5H8 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
PCDHA3Q9Y5H8 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.27■■□□□ 1.48
PCDHA3Q9Y5H8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
PCDHA3Q9Y5H8 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 DUSP8P5-201ENST00000422884 1815 ntBASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.26■■□□□ 1.47
PCDHA3Q9Y5H8 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC24.25■■□□□ 1.47
PCDHA3Q9Y5H8 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHA3Q9Y5H8 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
PCDHA3Q9Y5H8 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC24.25■■□□□ 1.47
PCDHA3Q9Y5H8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 AC087393.1-201ENST00000582896 145 ntBASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 HYI-213ENST00000583037 1322 ntTSL 5 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 AC090877.2-201ENST00000558441 1738 ntBASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
PCDHA3Q9Y5H8 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA3Q9Y5H8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA3Q9Y5H8 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
PCDHA3Q9Y5H8 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.47
PCDHA3Q9Y5H8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.47
PCDHA3Q9Y5H8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.2■■□□□ 1.46
PCDHA3Q9Y5H8 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA3Q9Y5H8 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA3Q9Y5H8 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 AL592295.1-201ENST00000400984 884 ntBASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA3Q9Y5H8 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms