Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
CHMP1AQ9HD42 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 AC022413.1-201ENST00000624602 984 ntBASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP1AQ9HD42 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 AC092296.2-201ENST00000589470 999 ntBASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP1AQ9HD42 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 CLDN5-201ENST00000403084 2357 ntBASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 RP9P-202ENST00000450133 1212 ntBASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 ECEL1P2-201ENST00000461596 1295 ntBASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP1AQ9HD42 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 MIR639-201ENST00000384974 98 ntBASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP1AQ9HD42 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.77■□□□□ 0.75
CHMP1AQ9HD42 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CHMP1AQ9HD42 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 AC093536.1-201ENST00000569153 554 ntBASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP1AQ9HD42 AC141586.4-201ENST00000624558 1573 ntBASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 DUSP8P5-201ENST00000422884 1815 ntBASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP1AQ9HD42 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.74■□□□□ 0.75
CHMP1AQ9HD42 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CHMP1AQ9HD42 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms