Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC25.33■■□□□ 1.65
CDT1Q9H211 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC25.33■■□□□ 1.65
CDT1Q9H211 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CDT1Q9H211 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CDT1Q9H211 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CDT1Q9H211 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CDT1Q9H211 LBH-205ENST00000407930 756 ntTSL 2 BASIC25.32■■□□□ 1.64
CDT1Q9H211 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.32■■□□□ 1.64
CDT1Q9H211 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.32■■□□□ 1.64
CDT1Q9H211 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC25.32■■□□□ 1.64
CDT1Q9H211 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.32■■□□□ 1.64
CDT1Q9H211 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC25.32■■□□□ 1.64
CDT1Q9H211 GRAMD4P7-201ENST00000578182 1232 ntBASIC25.32■■□□□ 1.64
CDT1Q9H211 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.32■■□□□ 1.64
CDT1Q9H211 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDT1Q9H211 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC25.31■■□□□ 1.64
CDT1Q9H211 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDT1Q9H211 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDT1Q9H211 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC25.31■■□□□ 1.64
CDT1Q9H211 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CDT1Q9H211 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 AC020928.2-201ENST00000588717 2197 ntBASIC25.3■■□□□ 1.64
CDT1Q9H211 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC25.3■■□□□ 1.64
CDT1Q9H211 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
CDT1Q9H211 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.3■■□□□ 1.64
CDT1Q9H211 KRT16P3-201ENST00000439127 1283 ntBASIC25.3■■□□□ 1.64
CDT1Q9H211 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
CDT1Q9H211 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC25.3■■□□□ 1.64
CDT1Q9H211 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.3■■□□□ 1.64
CDT1Q9H211 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CDT1Q9H211 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDT1Q9H211 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CDT1Q9H211 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDT1Q9H211 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDT1Q9H211 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.29■■□□□ 1.64
CDT1Q9H211 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.29■■□□□ 1.64
CDT1Q9H211 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
CDT1Q9H211 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.29■■□□□ 1.64
CDT1Q9H211 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC25.29■■□□□ 1.64
CDT1Q9H211 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC25.29■■□□□ 1.64
CDT1Q9H211 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
CDT1Q9H211 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CDT1Q9H211 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CDT1Q9H211 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.28■■□□□ 1.64
CDT1Q9H211 SNX5-217ENST00000606557 1087 ntBASIC25.28■■□□□ 1.64
CDT1Q9H211 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CDT1Q9H211 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
CDT1Q9H211 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.27■■□□□ 1.64
CDT1Q9H211 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDT1Q9H211 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDT1Q9H211 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
CDT1Q9H211 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CDT1Q9H211 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDT1Q9H211 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CDT1Q9H211 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.27■■□□□ 1.64
CDT1Q9H211 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC25.27■■□□□ 1.64
CDT1Q9H211 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CDT1Q9H211 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
CDT1Q9H211 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CDT1Q9H211 AC131212.1-201ENST00000613771 668 ntBASIC25.26■■□□□ 1.63
CDT1Q9H211 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CDT1Q9H211 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 MTDHP2-201ENST00000601468 714 ntBASIC25.25■■□□□ 1.63
CDT1Q9H211 AC010997.5-201ENST00000609182 354 ntBASIC25.25■■□□□ 1.63
CDT1Q9H211 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.25■■□□□ 1.63
CDT1Q9H211 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC25.25■■□□□ 1.63
CDT1Q9H211 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
CDT1Q9H211 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
CDT1Q9H211 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.24■■□□□ 1.63
CDT1Q9H211 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.24■■□□□ 1.63
CDT1Q9H211 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
CDT1Q9H211 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.24■■□□□ 1.63
CDT1Q9H211 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC25.24■■□□□ 1.63
CDT1Q9H211 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CDT1Q9H211 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CDT1Q9H211 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.24■■□□□ 1.63
CDT1Q9H211 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDT1Q9H211 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.23■■□□□ 1.63
CDT1Q9H211 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDT1Q9H211 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC25.23■■□□□ 1.63
CDT1Q9H211 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CDT1Q9H211 AC142381.3-201ENST00000568208 1670 ntBASIC25.23■■□□□ 1.63
CDT1Q9H211 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.22■■□□□ 1.63
CDT1Q9H211 AC131274.2-201ENST00000580697 1507 ntBASIC25.22■■□□□ 1.63
CDT1Q9H211 MED17-227ENST00000640521 2047 ntTSL 5 BASIC25.22■■□□□ 1.63
CDT1Q9H211 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CDT1Q9H211 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.22■■□□□ 1.63
CDT1Q9H211 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.22■■□□□ 1.63
CDT1Q9H211 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CDT1Q9H211 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.22■■□□□ 1.63
CDT1Q9H211 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CDT1Q9H211 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms