Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
NR1H4Q96RI1 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
NR1H4Q96RI1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
NR1H4Q96RI1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
NR1H4Q96RI1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.83■■□□□ 1.08
NR1H4Q96RI1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.83■■□□□ 1.08
NR1H4Q96RI1 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
NR1H4Q96RI1 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
NR1H4Q96RI1 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
NR1H4Q96RI1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NR1H4Q96RI1 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
NR1H4Q96RI1 AL137060.1-201ENST00000618151 2648 ntBASIC21.78■■□□□ 1.08
NR1H4Q96RI1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NR1H4Q96RI1 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NR1H4Q96RI1 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
NR1H4Q96RI1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 AC005559.1-201ENST00000589661 871 ntBASIC21.77■■□□□ 1.08
NR1H4Q96RI1 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NR1H4Q96RI1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.07
NR1H4Q96RI1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NR1H4Q96RI1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 SUZ12P1-203ENST00000578195 985 ntBASIC21.76■■□□□ 1.07
NR1H4Q96RI1 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 LINC00273-201ENST00000539813 1452 ntBASIC21.76■■□□□ 1.07
NR1H4Q96RI1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.76■■□□□ 1.07
NR1H4Q96RI1 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NR1H4Q96RI1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.74■■□□□ 1.07
NR1H4Q96RI1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NR1H4Q96RI1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.74■■□□□ 1.07
NR1H4Q96RI1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NR1H4Q96RI1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.73■■□□□ 1.07
NR1H4Q96RI1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms