Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL21A1Q96P44 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.86■■□□□ 1.09
COL21A1Q96P44 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL21A1Q96P44 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 LONRF2P2-201ENST00000439212 571 ntBASIC21.85■■□□□ 1.09
COL21A1Q96P44 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
COL21A1Q96P44 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL21A1Q96P44 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.84■■□□□ 1.09
COL21A1Q96P44 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
COL21A1Q96P44 LINC00543-201ENST00000567234 1845 ntBASIC21.83■■□□□ 1.09
COL21A1Q96P44 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL21A1Q96P44 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
COL21A1Q96P44 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
COL21A1Q96P44 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
COL21A1Q96P44 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.82■■□□□ 1.08
COL21A1Q96P44 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
COL21A1Q96P44 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
COL21A1Q96P44 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
COL21A1Q96P44 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC21.82■■□□□ 1.08
COL21A1Q96P44 AC010980.1-201ENST00000587192 1142 ntBASIC21.82■■□□□ 1.08
COL21A1Q96P44 AC019171.1-201ENST00000601251 1056 ntBASIC21.82■■□□□ 1.08
COL21A1Q96P44 MIR6089-201ENST00000616698 64 ntBASIC21.82■■□□□ 1.08
COL21A1Q96P44 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL21A1Q96P44 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL21A1Q96P44 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
COL21A1Q96P44 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL21A1Q96P44 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
COL21A1Q96P44 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COL21A1Q96P44 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.81■■□□□ 1.08
COL21A1Q96P44 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL21A1Q96P44 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC21.8■■□□□ 1.08
COL21A1Q96P44 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL21A1Q96P44 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.8■■□□□ 1.08
COL21A1Q96P44 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL21A1Q96P44 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL21A1Q96P44 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL21A1Q96P44 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL21A1Q96P44 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL21A1Q96P44 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.79■■□□□ 1.08
COL21A1Q96P44 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL21A1Q96P44 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.79■■□□□ 1.08
COL21A1Q96P44 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.79■■□□□ 1.08
COL21A1Q96P44 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL21A1Q96P44 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL21A1Q96P44 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.78■■□□□ 1.08
COL21A1Q96P44 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.78■■□□□ 1.08
COL21A1Q96P44 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 AC141586.4-201ENST00000624558 1573 ntBASIC21.78■■□□□ 1.08
COL21A1Q96P44 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL21A1Q96P44 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.77■■□□□ 1.08
COL21A1Q96P44 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC21.77■■□□□ 1.08
COL21A1Q96P44 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 PVT1_1.1-201ENST00000615125 194 ntBASIC21.77■■□□□ 1.08
COL21A1Q96P44 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.77■■□□□ 1.08
COL21A1Q96P44 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL21A1Q96P44 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL21A1Q96P44 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
COL21A1Q96P44 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL21A1Q96P44 FOXO3B-201ENST00000395675 1928 ntBASIC21.76■■□□□ 1.07
COL21A1Q96P44 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.76■■□□□ 1.07
COL21A1Q96P44 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.76■■□□□ 1.07
COL21A1Q96P44 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL21A1Q96P44 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL21A1Q96P44 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.76■■□□□ 1.07
COL21A1Q96P44 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL21A1Q96P44 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms