Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC26.73■■□□□ 1.87
SH3RF1Q7Z6J0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
SH3RF1Q7Z6J0 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC26.73■■□□□ 1.87
SH3RF1Q7Z6J0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SH3RF1Q7Z6J0 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
SH3RF1Q7Z6J0 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 AC120024.1-201ENST00000562672 995 ntBASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 AC092028.1-203ENST00000608262 953 ntBASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 AL139125.2-201ENST00000623134 1869 ntBASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC26.72■■□□□ 1.87
SH3RF1Q7Z6J0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
SH3RF1Q7Z6J0 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
SH3RF1Q7Z6J0 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
SH3RF1Q7Z6J0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.7■■□□□ 1.87
SH3RF1Q7Z6J0 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.7■■□□□ 1.86
SH3RF1Q7Z6J0 AC005837.3-201ENST00000612163 286 ntBASIC26.7■■□□□ 1.86
SH3RF1Q7Z6J0 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.7■■□□□ 1.86
SH3RF1Q7Z6J0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
SH3RF1Q7Z6J0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SH3RF1Q7Z6J0 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
SH3RF1Q7Z6J0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.69■■□□□ 1.86
SH3RF1Q7Z6J0 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 PREB-202ENST00000406567 1910 ntTSL 5 BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
SH3RF1Q7Z6J0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 AL117332.1-201ENST00000622628 974 ntBASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SH3RF1Q7Z6J0 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
SH3RF1Q7Z6J0 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SH3RF1Q7Z6J0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
SH3RF1Q7Z6J0 AC096631.2-201ENST00000436136 790 ntBASIC26.64■■□□□ 1.86
SH3RF1Q7Z6J0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.64■■□□□ 1.86
SH3RF1Q7Z6J0 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.64■■□□□ 1.86
SH3RF1Q7Z6J0 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
SH3RF1Q7Z6J0 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.85
SH3RF1Q7Z6J0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
SH3RF1Q7Z6J0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
SH3RF1Q7Z6J0 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 MIR3621-201ENST00000580529 85 ntBASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
SH3RF1Q7Z6J0 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms