Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC16.9■□□□□ 0.3
COL7A1Q02388 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC16.9■□□□□ 0.3
COL7A1Q02388 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
COL7A1Q02388 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
COL7A1Q02388 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.9■□□□□ 0.3
COL7A1Q02388 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL7A1Q02388 SYT6-210ENST00000641643 1587 ntBASIC16.89■□□□□ 0.29
COL7A1Q02388 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL7A1Q02388 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL7A1Q02388 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.89■□□□□ 0.29
COL7A1Q02388 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL7A1Q02388 RAP2CP1-201ENST00000605103 478 ntBASIC16.89■□□□□ 0.29
COL7A1Q02388 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC16.89■□□□□ 0.29
COL7A1Q02388 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.88■□□□□ 0.29
COL7A1Q02388 AK1-201ENST00000223836 736 ntTSL 3 BASIC16.88■□□□□ 0.29
COL7A1Q02388 SERBP1P1-201ENST00000396021 1160 ntBASIC16.88■□□□□ 0.29
COL7A1Q02388 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC16.88■□□□□ 0.29
COL7A1Q02388 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
COL7A1Q02388 AC099791.1-201ENST00000416440 715 ntBASIC16.88■□□□□ 0.29
COL7A1Q02388 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC16.88■□□□□ 0.29
COL7A1Q02388 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL7A1Q02388 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL7A1Q02388 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 PTCHD3P2-201ENST00000424937 1205 ntBASIC16.87■□□□□ 0.29
COL7A1Q02388 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 AC011298.3-201ENST00000615796 283 ntBASIC16.87■□□□□ 0.29
COL7A1Q02388 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 AC004448.1-201ENST00000458332 883 ntBASIC16.87■□□□□ 0.29
COL7A1Q02388 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC16.87■□□□□ 0.29
COL7A1Q02388 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL7A1Q02388 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 SP2-202ENST00000613139 908 ntTSL 5 BASIC16.86■□□□□ 0.29
COL7A1Q02388 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC16.86■□□□□ 0.29
COL7A1Q02388 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC16.86■□□□□ 0.29
COL7A1Q02388 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC16.86■□□□□ 0.29
COL7A1Q02388 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.86■□□□□ 0.29
COL7A1Q02388 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.86■□□□□ 0.29
COL7A1Q02388 AL137784.2-201ENST00000607332 1000 ntBASIC16.86■□□□□ 0.29
COL7A1Q02388 AC233992.3-201ENST00000607491 485 ntBASIC16.86■□□□□ 0.29
COL7A1Q02388 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL7A1Q02388 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC16.85■□□□□ 0.29
COL7A1Q02388 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.85■□□□□ 0.29
COL7A1Q02388 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL7A1Q02388 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
COL7A1Q02388 MIR6722-201ENST00000617286 78 ntBASIC16.85■□□□□ 0.29
COL7A1Q02388 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
COL7A1Q02388 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL7A1Q02388 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.84■□□□□ 0.29
COL7A1Q02388 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
COL7A1Q02388 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC16.84■□□□□ 0.29
COL7A1Q02388 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.84■□□□□ 0.29
COL7A1Q02388 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC16.84■□□□□ 0.29
COL7A1Q02388 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL7A1Q02388 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC16.84■□□□□ 0.29
COL7A1Q02388 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.84■□□□□ 0.29
COL7A1Q02388 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL7A1Q02388 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL7A1Q02388 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL7A1Q02388 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL7A1Q02388 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL7A1Q02388 HLA-L-209ENST00000420110 1011 ntBASIC16.83■□□□□ 0.29
COL7A1Q02388 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
COL7A1Q02388 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.83■□□□□ 0.29
COL7A1Q02388 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
COL7A1Q02388 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL7A1Q02388 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.83■□□□□ 0.28
COL7A1Q02388 C17orf82-201ENST00000623772 1530 ntBASIC16.83■□□□□ 0.28
COL7A1Q02388 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.83■□□□□ 0.28
COL7A1Q02388 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC16.83■□□□□ 0.28
COL7A1Q02388 AC005703.6-201ENST00000623265 1329 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L2-201ENST00000561772 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L6-201ENST00000626483 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L1-201ENST00000627662 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L8-201ENST00000629013 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L3-201ENST00000630187 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L7-201ENST00000630678 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 DUX4L5-201ENST00000630834 1275 ntBASIC16.82■□□□□ 0.28
COL7A1Q02388 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL7A1Q02388 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL7A1Q02388 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC16.82■□□□□ 0.28
COL7A1Q02388 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL7A1Q02388 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL7A1Q02388 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC16.81■□□□□ 0.28
COL7A1Q02388 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms