Protein–RNA interactions for Protein: P48066

SLC6A11, Sodium- and chloride-dependent GABA transporter 3, humanhuman

Predictions only

Length 632 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A11P48066 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC23.8■■□□□ 1.4
SLC6A11P48066 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC23.8■■□□□ 1.4
SLC6A11P48066 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.8■■□□□ 1.4
SLC6A11P48066 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SLC6A11P48066 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A11P48066 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC6A11P48066 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC6A11P48066 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A11P48066 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A11P48066 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC6A11P48066 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC6A11P48066 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SLC6A11P48066 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23.79■■□□□ 1.4
SLC6A11P48066 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC6A11P48066 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
SLC6A11P48066 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SLC6A11P48066 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC23.78■■□□□ 1.4
SLC6A11P48066 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A11P48066 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.77■■□□□ 1.4
SLC6A11P48066 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A11P48066 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A11P48066 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC6A11P48066 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC23.77■■□□□ 1.4
SLC6A11P48066 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC23.77■■□□□ 1.4
SLC6A11P48066 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SLC6A11P48066 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
SLC6A11P48066 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A11P48066 SLC6A10P-202ENST00000431994 2058 ntBASIC23.76■■□□□ 1.39
SLC6A11P48066 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.76■■□□□ 1.39
SLC6A11P48066 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC23.76■■□□□ 1.39
SLC6A11P48066 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A11P48066 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.76■■□□□ 1.39
SLC6A11P48066 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC6A11P48066 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SLC6A11P48066 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SLC6A11P48066 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.75■■□□□ 1.39
SLC6A11P48066 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.75■■□□□ 1.39
SLC6A11P48066 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC23.75■■□□□ 1.39
SLC6A11P48066 AC004448.1-201ENST00000458332 883 ntBASIC23.75■■□□□ 1.39
SLC6A11P48066 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC23.75■■□□□ 1.39
SLC6A11P48066 AC005837.3-201ENST00000612163 286 ntBASIC23.75■■□□□ 1.39
SLC6A11P48066 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SLC6A11P48066 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC6A11P48066 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SLC6A11P48066 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SLC6A11P48066 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.74■■□□□ 1.39
SLC6A11P48066 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SLC6A11P48066 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC23.73■■□□□ 1.39
SLC6A11P48066 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC23.73■■□□□ 1.39
SLC6A11P48066 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.73■■□□□ 1.39
SLC6A11P48066 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SLC6A11P48066 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SLC6A11P48066 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC6A11P48066 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.72■■□□□ 1.39
SLC6A11P48066 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SLC6A11P48066 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
SLC6A11P48066 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC6A11P48066 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC6A11P48066 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC6A11P48066 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SLC6A11P48066 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
SLC6A11P48066 DUSP8P4-201ENST00000399538 1761 ntBASIC23.7■■□□□ 1.39
SLC6A11P48066 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC6A11P48066 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.7■■□□□ 1.38
SLC6A11P48066 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC6A11P48066 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC23.7■■□□□ 1.38
SLC6A11P48066 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC6A11P48066 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SLC6A11P48066 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC23.7■■□□□ 1.38
SLC6A11P48066 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.7■■□□□ 1.38
SLC6A11P48066 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
SLC6A11P48066 AC091060.1-201ENST00000623524 1766 ntBASIC23.7■■□□□ 1.38
SLC6A11P48066 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.7■■□□□ 1.38
SLC6A11P48066 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
SLC6A11P48066 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
SLC6A11P48066 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC23.69■■□□□ 1.38
SLC6A11P48066 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SLC6A11P48066 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SLC6A11P48066 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC6A11P48066 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SLC6A11P48066 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC23.68■■□□□ 1.38
SLC6A11P48066 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SLC6A11P48066 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.68■■□□□ 1.38
SLC6A11P48066 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
SLC6A11P48066 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.68■■□□□ 1.38
SLC6A11P48066 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
SLC6A11P48066 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.67■■□□□ 1.38
SLC6A11P48066 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms