Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC27.45■■□□□ 1.98
SHMT1P34896 MIR4466-201ENST00000606121 54 ntBASIC27.45■■□□□ 1.98
SHMT1P34896 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC27.45■■□□□ 1.98
SHMT1P34896 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC27.45■■□□□ 1.98
SHMT1P34896 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC27.44■■□□□ 1.98
SHMT1P34896 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHMT1P34896 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC27.44■■□□□ 1.98
SHMT1P34896 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHMT1P34896 RASSF1-AS1-201ENST00000629828 790 ntBASIC27.44■■□□□ 1.98
SHMT1P34896 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
SHMT1P34896 AC019069.1-201ENST00000610008 1333 ntBASIC27.43■■□□□ 1.98
SHMT1P34896 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC27.43■■□□□ 1.98
SHMT1P34896 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SHMT1P34896 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.43■■□□□ 1.98
SHMT1P34896 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.43■■□□□ 1.98
SHMT1P34896 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC27.43■■□□□ 1.98
SHMT1P34896 CEBPA-AS1-201ENST00000592982 2198 ntBASIC27.43■■□□□ 1.98
SHMT1P34896 AL136116.3-201ENST00000402907 1138 ntBASIC27.42■■□□□ 1.98
SHMT1P34896 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC27.42■■□□□ 1.98
SHMT1P34896 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC27.42■■□□□ 1.98
SHMT1P34896 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.41■■□□□ 1.98
SHMT1P34896 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.41■■□□□ 1.98
SHMT1P34896 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
SHMT1P34896 AK3-203ENST00000447596 705 ntTSL 2 BASIC27.41■■□□□ 1.98
SHMT1P34896 MIR6089-201ENST00000616698 64 ntBASIC27.41■■□□□ 1.98
SHMT1P34896 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.4■■□□□ 1.98
SHMT1P34896 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC27.4■■□□□ 1.98
SHMT1P34896 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC27.4■■□□□ 1.98
SHMT1P34896 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC27.4■■□□□ 1.98
SHMT1P34896 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHMT1P34896 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SHMT1P34896 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SHMT1P34896 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC27.4■■□□□ 1.98
SHMT1P34896 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SHMT1P34896 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC27.4■■□□□ 1.98
SHMT1P34896 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC27.39■■□□□ 1.98
SHMT1P34896 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SHMT1P34896 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
SHMT1P34896 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC27.39■■□□□ 1.98
SHMT1P34896 AC004448.1-201ENST00000458332 883 ntBASIC27.39■■□□□ 1.98
SHMT1P34896 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC27.39■■□□□ 1.98
SHMT1P34896 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC27.39■■□□□ 1.98
SHMT1P34896 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC27.39■■□□□ 1.98
SHMT1P34896 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
SHMT1P34896 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC27.38■■□□□ 1.97
SHMT1P34896 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
SHMT1P34896 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
SHMT1P34896 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHMT1P34896 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC27.38■■□□□ 1.97
SHMT1P34896 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SHMT1P34896 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27.37■■□□□ 1.97
SHMT1P34896 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC27.37■■□□□ 1.97
SHMT1P34896 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHMT1P34896 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SHMT1P34896 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC27.37■■□□□ 1.97
SHMT1P34896 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SHMT1P34896 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC27.37■■□□□ 1.97
SHMT1P34896 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SHMT1P34896 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
SHMT1P34896 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SHMT1P34896 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
SHMT1P34896 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC27.36■■□□□ 1.97
SHMT1P34896 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SHMT1P34896 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC27.36■■□□□ 1.97
SHMT1P34896 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SHMT1P34896 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SHMT1P34896 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC27.35■■□□□ 1.97
SHMT1P34896 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHMT1P34896 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
SHMT1P34896 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
SHMT1P34896 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC27.34■■□□□ 1.97
SHMT1P34896 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHMT1P34896 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SHMT1P34896 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHMT1P34896 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC27.34■■□□□ 1.97
SHMT1P34896 AC131274.2-201ENST00000580697 1507 ntBASIC27.34■■□□□ 1.97
SHMT1P34896 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SHMT1P34896 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SHMT1P34896 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC27.33■■□□□ 1.97
SHMT1P34896 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SHMT1P34896 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
SHMT1P34896 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SHMT1P34896 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SHMT1P34896 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC27.32■■□□□ 1.96
SHMT1P34896 LSR-205ENST00000427250 1606 ntTSL 2 BASIC27.31■■□□□ 1.96
SHMT1P34896 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC27.31■■□□□ 1.96
SHMT1P34896 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SHMT1P34896 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SHMT1P34896 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SHMT1P34896 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC27.31■■□□□ 1.96
SHMT1P34896 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SHMT1P34896 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
SHMT1P34896 MIR638-201ENST00000385237 100 ntBASIC27.3■■□□□ 1.96
SHMT1P34896 NALT1-201ENST00000429224 738 ntTSL 5 BASIC27.3■■□□□ 1.96
SHMT1P34896 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHMT1P34896 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC27.3■■□□□ 1.96
SHMT1P34896 AL139246.5-201ENST00000606645 996 ntBASIC27.3■■□□□ 1.96
SHMT1P34896 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
SHMT1P34896 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SHMT1P34896 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms