Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.06■■□□□ 1.6
LRRC53A6NM62 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
LRRC53A6NM62 RPS2P7-201ENST00000447334 885 ntBASIC25.06■■□□□ 1.6
LRRC53A6NM62 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
LRRC53A6NM62 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.06■■□□□ 1.6
LRRC53A6NM62 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
LRRC53A6NM62 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
LRRC53A6NM62 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.06■■□□□ 1.6
LRRC53A6NM62 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRRC53A6NM62 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
LRRC53A6NM62 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
LRRC53A6NM62 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRRC53A6NM62 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.05■■□□□ 1.6
LRRC53A6NM62 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
LRRC53A6NM62 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.04■■□□□ 1.6
LRRC53A6NM62 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.04■■□□□ 1.6
LRRC53A6NM62 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
LRRC53A6NM62 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
LRRC53A6NM62 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC25.03■■□□□ 1.6
LRRC53A6NM62 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.03■■□□□ 1.6
LRRC53A6NM62 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRC53A6NM62 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC25.03■■□□□ 1.6
LRRC53A6NM62 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRC53A6NM62 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
LRRC53A6NM62 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
LRRC53A6NM62 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
LRRC53A6NM62 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
LRRC53A6NM62 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
LRRC53A6NM62 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.02■■□□□ 1.6
LRRC53A6NM62 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC25.01■■□□□ 1.59
LRRC53A6NM62 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LRRC53A6NM62 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.01■■□□□ 1.59
LRRC53A6NM62 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC25.01■■□□□ 1.59
LRRC53A6NM62 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
LRRC53A6NM62 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
LRRC53A6NM62 AC018755.3-202ENST00000596210 929 ntBASIC25.01■■□□□ 1.59
LRRC53A6NM62 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.01■■□□□ 1.59
LRRC53A6NM62 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
LRRC53A6NM62 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
LRRC53A6NM62 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
LRRC53A6NM62 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
LRRC53A6NM62 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LRRC53A6NM62 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
LRRC53A6NM62 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LRRC53A6NM62 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25■■□□□ 1.59
LRRC53A6NM62 DUSP8P5-201ENST00000422884 1815 ntBASIC25■■□□□ 1.59
LRRC53A6NM62 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25■■□□□ 1.59
LRRC53A6NM62 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC25■■□□□ 1.59
LRRC53A6NM62 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
LRRC53A6NM62 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.99■■□□□ 1.59
LRRC53A6NM62 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.99■■□□□ 1.59
LRRC53A6NM62 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC24.99■■□□□ 1.59
LRRC53A6NM62 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.99■■□□□ 1.59
LRRC53A6NM62 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.99■■□□□ 1.59
LRRC53A6NM62 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
LRRC53A6NM62 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LRRC53A6NM62 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 AC068473.5-201ENST00000616428 2072 ntBASIC24.98■■□□□ 1.59
LRRC53A6NM62 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC24.98■■□□□ 1.59
LRRC53A6NM62 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
LRRC53A6NM62 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
LRRC53A6NM62 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
LRRC53A6NM62 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.97■■□□□ 1.59
LRRC53A6NM62 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.97■■□□□ 1.59
LRRC53A6NM62 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
LRRC53A6NM62 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24.96■■□□□ 1.59
LRRC53A6NM62 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
LRRC53A6NM62 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC24.96■■□□□ 1.59
LRRC53A6NM62 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
LRRC53A6NM62 DUX4L9-201ENST00000449051 1259 ntBASIC24.96■■□□□ 1.59
LRRC53A6NM62 AC087393.1-201ENST00000582896 145 ntBASIC24.96■■□□□ 1.59
LRRC53A6NM62 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.96■■□□□ 1.59
LRRC53A6NM62 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.96■■□□□ 1.59
LRRC53A6NM62 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC24.96■■□□□ 1.59
LRRC53A6NM62 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
LRRC53A6NM62 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
LRRC53A6NM62 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
LRRC53A6NM62 AC090877.2-201ENST00000558441 1738 ntBASIC24.95■■□□□ 1.59
LRRC53A6NM62 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.59
LRRC53A6NM62 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
LRRC53A6NM62 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
LRRC53A6NM62 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
LRRC53A6NM62 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.58
LRRC53A6NM62 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
LRRC53A6NM62 IDNK-203ENST00000405990 629 ntTSL 2 BASIC24.94■■□□□ 1.58
LRRC53A6NM62 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
LRRC53A6NM62 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 135.7 ms