Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC23.27■■□□□ 1.31
CCDC163A0A0D9SF12 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC23.27■■□□□ 1.31
CCDC163A0A0D9SF12 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC163A0A0D9SF12 AC139426.1-201ENST00000568218 2529 ntBASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 MIR4767-201ENST00000582827 78 ntBASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 AL138724.1-201ENST00000606771 1088 ntBASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC163A0A0D9SF12 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 GLI3-203ENST00000437480 451 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 CA15P2-201ENST00000611168 834 ntBASIC23.24■■□□□ 1.31
CCDC163A0A0D9SF12 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 AC027682.1-201ENST00000562846 899 ntBASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC163A0A0D9SF12 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 AC097639.1-201ENST00000565519 1891 ntBASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 AL162430.1-201ENST00000480705 870 ntBASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 AC011298.3-201ENST00000615796 283 ntBASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC163A0A0D9SF12 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 AC087623.3-201ENST00000607047 1098 ntBASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC163A0A0D9SF12 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC163A0A0D9SF12 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.2■■□□□ 1.3
CCDC163A0A0D9SF12 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC163A0A0D9SF12 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 SERBP1P1-201ENST00000396021 1160 ntBASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC163A0A0D9SF12 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 MAG-206ENST00000597035 542 ntTSL 4 BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC163A0A0D9SF12 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 IRS3P-201ENST00000223076 1006 ntBASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC163A0A0D9SF12 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC163A0A0D9SF12 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC163A0A0D9SF12 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.15■■□□□ 1.3
CCDC163A0A0D9SF12 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC163A0A0D9SF12 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC163A0A0D9SF12 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC163A0A0D9SF12 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC163A0A0D9SF12 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.14■■□□□ 1.29
CCDC163A0A0D9SF12 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC163A0A0D9SF12 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms