Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.29□□□□□ -0.12
LRFN1Q9P244 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.29□□□□□ -0.12
LRFN1Q9P244 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 BCRP2-202ENST00000447763 634 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 BCRP6-201ENST00000510112 632 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 BCRP7-201ENST00000511549 544 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AC104989.1-201ENST00000519711 778 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 NAA38-206ENST00000576384 424 ntTSL 2 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CLUHP6-201ENST00000580789 941 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 AC133552.6-201ENST00000613406 534 ntBASIC14.28□□□□□ -0.12
LRFN1Q9P244 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.28□□□□□ -0.12
LRFN1Q9P244 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
LRFN1Q9P244 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LRFN1Q9P244 AC024909.3-201ENST00000611513 2257 ntBASIC14.27□□□□□ -0.12
LRFN1Q9P244 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.27□□□□□ -0.12
LRFN1Q9P244 AL603832.2-201ENST00000566195 2125 ntBASIC14.27□□□□□ -0.12
LRFN1Q9P244 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
LRFN1Q9P244 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LRFN1Q9P244 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
LRFN1Q9P244 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
LRFN1Q9P244 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AC005229.1-201ENST00000392885 409 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 BAATP1-201ENST00000412284 1225 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 RPS2P32-201ENST00000439199 892 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AC107373.2-201ENST00000607735 490 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 Six3os1_5.1-201ENST00000611000 271 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 MIR6775-201ENST00000617557 69 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 AC005252.2-201ENST00000624630 1141 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.27□□□□□ -0.13
LRFN1Q9P244 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.27□□□□□ -0.13
LRFN1Q9P244 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LRFN1Q9P244 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms