Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 CROCCP1-201ENST00000426910 5675 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 RNU1-114P-201ENST00000365297 166 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 KRT18P25-201ENST00000508931 1278 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 AP005482.1-201ENST00000563722 1273 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 MIR4259-201ENST00000584466 101 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 MIR6752-201ENST00000618442 71 ntBASIC16.63■□□□□ 0.25
CNTN3Q9P232 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.63■□□□□ 0.25
CNTN3Q9P232 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CNTN3Q9P232 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ACTBP8-201ENST00000403258 1108 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 KLF2P2-201ENST00000416807 1039 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 AC114812.1-204ENST00000449669 728 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 FTH1P14-201ENST00000482930 551 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 AC104989.1-201ENST00000519711 778 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 SAMD11P1-201ENST00000571429 661 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 COX11-210ENST00000639671 696 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 KRT8P35-201ENST00000483942 1338 ntBASIC16.62■□□□□ 0.25
CNTN3Q9P232 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.62■□□□□ 0.25
CNTN3Q9P232 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CNTN3Q9P232 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms