Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 AL662844.1-201ENST00000546340 181 ntBASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 KRT19P2-202ENST00000557173 1012 ntBASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 AC243562.2-201ENST00000561247 970 ntBASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 AC064836.3-201ENST00000607928 673 ntBASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CHMP1AQ9HD42 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 LINC00552-201ENST00000625151 2579 ntBASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 REM2-202ENST00000536884 1331 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 BEX3-201ENST00000361298 921 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 AC002056.1-201ENST00000395613 760 ntBASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 MRPL3P1-201ENST00000400109 1033 ntBASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 PENK-208ENST00000523051 772 ntTSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 AC024267.1-201ENST00000582320 895 ntBASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 AC068137.2-201ENST00000605408 478 ntBASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 FHL2-212ENST00000607522 759 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
CHMP1AQ9HD42 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 AC104109.2-201ENST00000602919 1418 ntBASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 AL390755.1-201ENST00000623716 2027 ntBASIC13.47□□□□□ -0.25
CHMP1AQ9HD42 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms