Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AC027307.2-201ENST00000591252 911 ntBASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AC099522.2-201ENST00000607001 744 ntBASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AC008267.7-201ENST00000624570 1194 ntBASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 AC007326.2-201ENST00000624224 7579 ntBASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC28BQ9BUN5 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AC074386.1-202ENST00000463561 864 ntBASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AC112191.1-201ENST00000523689 701 ntBASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 AC026979.3-201ENST00000607315 403 ntBASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC28BQ9BUN5 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28BQ9BUN5 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms