Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CCDC140Q96MF4 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 AP002414.2-201ENST00000591780 3365 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 GHSR-202ENST00000427970 912 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 RARRES2P5-201ENST00000564013 466 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 AC036164.1-201ENST00000570544 333 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 AC009118.2-201ENST00000613275 655 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 TCAF2P1-201ENST00000291129 2421 ntBASIC12.02□□□□□ -0.49
CCDC140Q96MF4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 TDG-209ENST00000544861 1387 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC12.02□□□□□ -0.49
CCDC140Q96MF4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 AC006058.4-201ENST00000624016 1670 ntBASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 GNAQP1-201ENST00000444815 1067 ntBASIC12.01□□□□□ -0.49
CCDC140Q96MF4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
CCDC140Q96MF4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms