Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 AC084121.4-201ENST00000641598 221 ntBASIC16.83■□□□□ 0.28
CCDC42Q96M95 AF228730.8-201ENST00000642140 221 ntBASIC16.83■□□□□ 0.28
CCDC42Q96M95 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
CCDC42Q96M95 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC42Q96M95 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 AC005912.2-201ENST00000619492 2400 ntBASIC16.82■□□□□ 0.28
CCDC42Q96M95 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC42Q96M95 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC42Q96M95 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CCDC42Q96M95 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC42Q96M95 FAM8A3P-201ENST00000427218 844 ntBASIC16.81■□□□□ 0.28
CCDC42Q96M95 AL592309.1-201ENST00000443127 649 ntBASIC16.81■□□□□ 0.28
CCDC42Q96M95 ACTG1P14-201ENST00000446382 1122 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 311.2 ms