Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 AC074338.1-201ENST00000416825 156 ntBASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 AC136604.1-201ENST00000418535 575 ntBASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 AL596325.1-201ENST00000563991 1082 ntBASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 MIR8072-201ENST00000614241 80 ntBASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHMP4CQ96CF2 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 BTBD7P1-201ENST00000447253 1453 ntBASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CHMP4CQ96CF2 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AC023157.3-201ENST00000619086 2088 ntBASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CALY-202ENST00000368555 783 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 TIMM17BP1-201ENST00000545713 516 ntBASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CHMP4CQ96CF2 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms