Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 AC073352.2-201ENST00000609385 439 ntBASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 RTN3P1-201ENST00000536295 711 ntBASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AL391005.1-201ENST00000623953 2435 ntBASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC005357.2-202ENST00000590507 1060 ntBASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 AL358472.3-201ENST00000608147 415 ntBASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.63■□□□□ 0.57
CCDC88AQ3V6T2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AL157791.1-201ENST00000553667 1699 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 CLUHP2-201ENST00000426660 1303 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AC097065.1-201ENST00000425737 517 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 CHMP1AP1-201ENST00000445563 662 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AC019193.1-201ENST00000506678 823 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 MIR4683-201ENST00000579659 81 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AC004466.1-201ENST00000599515 1080 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 AL008718.2-201ENST00000609206 1313 ntBASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC88AQ3V6T2 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.61■□□□□ 0.57
CCDC88AQ3V6T2 NEU3-205ENST00000531619 582 ntTSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms