Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
FOXF1Q12946 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXF1Q12946 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 RPL5P21-201ENST00000404620 815 ntBASIC14.08□□□□□ -0.16
FOXF1Q12946 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 PIN1P1-201ENST00000412108 996 ntBASIC14.08□□□□□ -0.16
FOXF1Q12946 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
FOXF1Q12946 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.08□□□□□ -0.16
FOXF1Q12946 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXF1Q12946 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.16
FOXF1Q12946 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXF1Q12946 AC093726.1-201ENST00000608064 963 ntBASIC14.08□□□□□ -0.16
FOXF1Q12946 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.08□□□□□ -0.16
FOXF1Q12946 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.08□□□□□ -0.16
FOXF1Q12946 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.08□□□□□ -0.16
FOXF1Q12946 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
FOXF1Q12946 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.08□□□□□ -0.16
FOXF1Q12946 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
FOXF1Q12946 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
FOXF1Q12946 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
FOXF1Q12946 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.07□□□□□ -0.16
FOXF1Q12946 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 AC087499.6-201ENST00000411576 835 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXF1Q12946 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXF1Q12946 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXF1Q12946 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 API5-211ENST00000534695 560 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
FOXF1Q12946 AC123567.1-201ENST00000548294 1261 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.07□□□□□ -0.16
FOXF1Q12946 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.07□□□□□ -0.16
FOXF1Q12946 AL049840.4-201ENST00000602422 811 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 CHCHD2P3-201ENST00000603038 451 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
FOXF1Q12946 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 AC138035.3-201ENST00000622706 2791 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 AL391825.1-201ENST00000457671 1364 ntBASIC14.07□□□□□ -0.16
FOXF1Q12946 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.07□□□□□ -0.16
FOXF1Q12946 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
FOXF1Q12946 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
FOXF1Q12946 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
FOXF1Q12946 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXF1Q12946 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.06□□□□□ -0.16
FOXF1Q12946 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
FOXF1Q12946 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
FOXF1Q12946 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
FOXF1Q12946 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms