Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.68■□□□□ 0.26
VCPP55072 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
VCPP55072 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 AC020658.6-201ENST00000623564 1870 ntBASIC16.68■□□□□ 0.26
VCPP55072 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 MIR1247-201ENST00000408206 136 ntBASIC16.68■□□□□ 0.26
VCPP55072 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.68■□□□□ 0.26
VCPP55072 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.68■□□□□ 0.26
VCPP55072 AC026979.3-201ENST00000607315 403 ntBASIC16.68■□□□□ 0.26
VCPP55072 MIR8072-201ENST00000614241 80 ntBASIC16.68■□□□□ 0.26
VCPP55072 RPSAP52-203ENST00000622976 1023 ntBASIC16.68■□□□□ 0.26
VCPP55072 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.68■□□□□ 0.26
VCPP55072 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
VCPP55072 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VCPP55072 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.68■□□□□ 0.26
VCPP55072 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VCPP55072 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
VCPP55072 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 ZNF767P-206ENST00000513792 565 ntBASIC16.67■□□□□ 0.26
VCPP55072 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.67■□□□□ 0.26
VCPP55072 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.67■□□□□ 0.26
VCPP55072 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.67■□□□□ 0.26
VCPP55072 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 SSR4P1-203ENST00000599569 2260 ntBASIC16.67■□□□□ 0.26
VCPP55072 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VCPP55072 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.67■□□□□ 0.26
VCPP55072 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VCPP55072 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.67■□□□□ 0.26
VCPP55072 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.66■□□□□ 0.26
VCPP55072 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
VCPP55072 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
VCPP55072 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.66■□□□□ 0.26
VCPP55072 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.66■□□□□ 0.26
VCPP55072 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.66■□□□□ 0.26
VCPP55072 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.66■□□□□ 0.26
VCPP55072 GPAA1P2-201ENST00000417923 928 ntBASIC16.66■□□□□ 0.26
VCPP55072 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VCPP55072 CSF2RBP1-201ENST00000447905 391 ntBASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms