Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.12■□□□□ 0.17
PTPN9P43378 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.12■□□□□ 0.17
PTPN9P43378 RPL13AP25-201ENST00000484130 612 ntBASIC16.12■□□□□ 0.17
PTPN9P43378 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.12■□□□□ 0.17
PTPN9P43378 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.12■□□□□ 0.17
PTPN9P43378 AL132655.2-201ENST00000596276 594 ntBASIC16.12■□□□□ 0.17
PTPN9P43378 AC093726.1-201ENST00000608064 963 ntBASIC16.12■□□□□ 0.17
PTPN9P43378 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PTPN9P43378 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 AC236430.1-201ENST00000402231 743 ntBASIC16.11■□□□□ 0.17
PTPN9P43378 AL353779.1-201ENST00000434793 351 ntBASIC16.11■□□□□ 0.17
PTPN9P43378 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN9P43378 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.11■□□□□ 0.17
PTPN9P43378 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN9P43378 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 MIR4745-201ENST00000577608 62 ntBASIC16.11■□□□□ 0.17
PTPN9P43378 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN9P43378 AC004233.3-201ENST00000607794 1269 ntBASIC16.11■□□□□ 0.17
PTPN9P43378 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.11■□□□□ 0.17
PTPN9P43378 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PTPN9P43378 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTPN9P43378 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.11■□□□□ 0.17
PTPN9P43378 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 AC012508.2-201ENST00000567613 1472 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 AC007541.1-201ENST00000570282 1469 ntBASIC16.1■□□□□ 0.17
PTPN9P43378 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PTPN9P43378 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTPN9P43378 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
PTPN9P43378 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.1■□□□□ 0.17
PTPN9P43378 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms