Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL5A3P25940 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.03■□□□□ 0.64
COL5A3P25940 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.03■□□□□ 0.64
COL5A3P25940 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC19.03■□□□□ 0.64
COL5A3P25940 NME2-201ENST00000393183 568 ntTSL 2 BASIC19.03■□□□□ 0.64
COL5A3P25940 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.03■□□□□ 0.64
COL5A3P25940 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.03■□□□□ 0.64
COL5A3P25940 AC103691.2-201ENST00000618824 433 ntBASIC19.03■□□□□ 0.64
COL5A3P25940 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.03■□□□□ 0.64
COL5A3P25940 AL359258.3-201ENST00000622910 2331 ntBASIC19.03■□□□□ 0.64
COL5A3P25940 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC19.03■□□□□ 0.64
COL5A3P25940 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL5A3P25940 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC19.03■□□□□ 0.64
COL5A3P25940 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC19.03■□□□□ 0.64
COL5A3P25940 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC19.03■□□□□ 0.64
COL5A3P25940 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC19.03■□□□□ 0.64
COL5A3P25940 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
COL5A3P25940 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A3P25940 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A3P25940 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL5A3P25940 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A3P25940 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL5A3P25940 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.02■□□□□ 0.64
COL5A3P25940 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.02■□□□□ 0.64
COL5A3P25940 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A3P25940 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A3P25940 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A3P25940 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL5A3P25940 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A3P25940 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.02■□□□□ 0.63
COL5A3P25940 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC19.02■□□□□ 0.63
COL5A3P25940 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.02■□□□□ 0.63
COL5A3P25940 MIR6720-201ENST00000611664 98 ntBASIC19.02■□□□□ 0.63
COL5A3P25940 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.02■□□□□ 0.63
COL5A3P25940 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.02■□□□□ 0.63
COL5A3P25940 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A3P25940 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL5A3P25940 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A3P25940 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A3P25940 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.01■□□□□ 0.63
COL5A3P25940 AC114501.1-201ENST00000445949 172 ntBASIC19.01■□□□□ 0.63
COL5A3P25940 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC19.01■□□□□ 0.63
COL5A3P25940 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC19.01■□□□□ 0.63
COL5A3P25940 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC19.01■□□□□ 0.63
COL5A3P25940 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 AC087045.2-201ENST00000606279 1003 ntBASIC19.01■□□□□ 0.63
COL5A3P25940 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A3P25940 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A3P25940 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.01■□□□□ 0.63
COL5A3P25940 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.01■□□□□ 0.63
COL5A3P25940 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL5A3P25940 CICP11-201ENST00000434745 2827 ntBASIC19■□□□□ 0.63
COL5A3P25940 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 LINC01165-201ENST00000445190 1623 ntBASIC19■□□□□ 0.63
COL5A3P25940 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC19■□□□□ 0.63
COL5A3P25940 RNA5SP359-201ENST00000364838 113 ntBASIC19■□□□□ 0.63
COL5A3P25940 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 AC012441.2-201ENST00000444843 739 ntBASIC19■□□□□ 0.63
COL5A3P25940 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC19■□□□□ 0.63
COL5A3P25940 AC092171.5-201ENST00000608012 942 ntBASIC19■□□□□ 0.63
COL5A3P25940 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19■□□□□ 0.63
COL5A3P25940 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL5A3P25940 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms