Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 SHC1P1-201ENST00000425230 1745 ntBASIC14.59□□□□□ -0.07
COL5A1P20908 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 AC006335.1-201ENST00000445200 547 ntBASIC14.59□□□□□ -0.07
COL5A1P20908 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC14.59□□□□□ -0.07
COL5A1P20908 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 IRF3-215ENST00000596822 823 ntTSL 3 BASIC14.59□□□□□ -0.07
COL5A1P20908 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 AC002472.3-201ENST00000640124 621 ntBASIC14.59□□□□□ -0.07
COL5A1P20908 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
COL5A1P20908 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL5A1P20908 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL5A1P20908 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL5A1P20908 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL5A1P20908 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
COL5A1P20908 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL5A1P20908 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
COL5A1P20908 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
COL5A1P20908 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 AL008718.2-201ENST00000609206 1313 ntBASIC14.58□□□□□ -0.08
COL5A1P20908 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
COL5A1P20908 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 LBH-202ENST00000401506 485 ntTSL 3 BASIC14.58□□□□□ -0.08
COL5A1P20908 AC012618.1-201ENST00000461223 412 ntBASIC14.58□□□□□ -0.08
COL5A1P20908 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.58□□□□□ -0.08
COL5A1P20908 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.58□□□□□ -0.08
COL5A1P20908 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.58□□□□□ -0.08
COL5A1P20908 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.58□□□□□ -0.08
COL5A1P20908 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
COL5A1P20908 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 RN7SKP214-201ENST00000364208 315 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL5A1P20908 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
COL5A1P20908 FAM58BP-201ENST00000439056 645 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.57□□□□□ -0.08
COL5A1P20908 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 IQSEC3P1-201ENST00000538799 536 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.57□□□□□ -0.08
COL5A1P20908 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.57□□□□□ -0.08
COL5A1P20908 AL162426.1-201ENST00000624141 743 ntBASIC14.57□□□□□ -0.08
COL5A1P20908 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC14.57□□□□□ -0.08
COL5A1P20908 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
COL5A1P20908 CENPX-208ENST00000584347 799 ntTSL 2 BASIC14.57□□□□□ -0.08
COL5A1P20908 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.57□□□□□ -0.08
COL5A1P20908 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.57□□□□□ -0.08
COL5A1P20908 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms