Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.14■□□□□ 0.01
LDLRP01130 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LDLRP01130 AC091951.1-201ENST00000512854 2465 ntBASIC15.14■□□□□ 0.01
LDLRP01130 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.13■□□□□ 0.01
LDLRP01130 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.13■□□□□ 0.01
LDLRP01130 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.13■□□□□ 0.01
LDLRP01130 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.13■□□□□ 0.01
LDLRP01130 IGHV3-62-201ENST00000520057 340 ntBASIC15.13■□□□□ 0.01
LDLRP01130 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 AC107918.2-201ENST00000530817 355 ntBASIC15.13■□□□□ 0.01
LDLRP01130 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.13■□□□□ 0.01
LDLRP01130 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.13■□□□□ 0.01
LDLRP01130 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.13■□□□□ 0.01
LDLRP01130 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.13■□□□□ 0.01
LDLRP01130 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 AC112693.3-201ENST00000624819 1983 ntBASIC15.13■□□□□ 0.01
LDLRP01130 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LDLRP01130 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LDLRP01130 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 C18orf15-201ENST00000623680 2534 ntBASIC15.12■□□□□ 0.01
LDLRP01130 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 ATP5G2P4-201ENST00000442175 420 ntBASIC15.12■□□□□ 0.01
LDLRP01130 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 KRT8P23-201ENST00000560090 1207 ntBASIC15.12■□□□□ 0.01
LDLRP01130 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.12■□□□□ 0.01
LDLRP01130 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.12■□□□□ 0.01
LDLRP01130 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
LDLRP01130 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LDLRP01130 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
LDLRP01130 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms