Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDGFBP01127 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
PDGFBP01127 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
PDGFBP01127 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
PDGFBP01127 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC15.4■□□□□ 0.06
PDGFBP01127 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.4■□□□□ 0.06
PDGFBP01127 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 AL161773.1-201ENST00000624845 863 ntBASIC15.4■□□□□ 0.06
PDGFBP01127 CASP16P-204ENST00000635032 809 ntBASIC15.4■□□□□ 0.06
PDGFBP01127 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
PDGFBP01127 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PDGFBP01127 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
PDGFBP01127 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
PDGFBP01127 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
PDGFBP01127 AL133373.2-201ENST00000623187 2828 ntBASIC15.39■□□□□ 0.06
PDGFBP01127 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.39■□□□□ 0.05
PDGFBP01127 FAU-202ENST00000434372 533 ntTSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.39■□□□□ 0.05
PDGFBP01127 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 RN7SL67P-201ENST00000492147 296 ntBASIC15.39■□□□□ 0.05
PDGFBP01127 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.39■□□□□ 0.05
PDGFBP01127 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.39■□□□□ 0.05
PDGFBP01127 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.39■□□□□ 0.05
PDGFBP01127 AL132994.2-201ENST00000603120 687 ntBASIC15.39■□□□□ 0.05
PDGFBP01127 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.39■□□□□ 0.05
PDGFBP01127 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
PDGFBP01127 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
PDGFBP01127 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.38■□□□□ 0.05
PDGFBP01127 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
PDGFBP01127 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.38■□□□□ 0.05
PDGFBP01127 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
PDGFBP01127 E2F3P2-201ENST00000447755 1422 ntBASIC15.38■□□□□ 0.05
PDGFBP01127 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.38■□□□□ 0.05
PDGFBP01127 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC15.38■□□□□ 0.05
PDGFBP01127 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.38■□□□□ 0.05
PDGFBP01127 AL512430.1-201ENST00000392575 860 ntBASIC15.38■□□□□ 0.05
PDGFBP01127 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC15.38■□□□□ 0.05
PDGFBP01127 AC004066.1-201ENST00000502488 802 ntBASIC15.38■□□□□ 0.05
PDGFBP01127 AC022616.1-201ENST00000518688 554 ntBASIC15.38■□□□□ 0.05
PDGFBP01127 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.38■□□□□ 0.05
PDGFBP01127 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
PDGFBP01127 AC009779.1-201ENST00000551138 283 ntBASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms