Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.23■□□□□ 0.03
SIX3O95343 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.23■□□□□ 0.03
SIX3O95343 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.23■□□□□ 0.03
SIX3O95343 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.23■□□□□ 0.03
SIX3O95343 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 AC134684.3-201ENST00000641758 218 ntBASIC15.23■□□□□ 0.03
SIX3O95343 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.23■□□□□ 0.03
SIX3O95343 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
SIX3O95343 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SIX3O95343 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
SIX3O95343 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 AP006288.1-201ENST00000446065 395 ntBASIC15.22■□□□□ 0.03
SIX3O95343 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.22■□□□□ 0.03
SIX3O95343 AL512356.2-201ENST00000546955 174 ntBASIC15.22■□□□□ 0.03
SIX3O95343 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 AC025048.3-201ENST00000590609 569 ntBASIC15.22■□□□□ 0.03
SIX3O95343 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 AL596442.2-201ENST00000610240 980 ntBASIC15.22■□□□□ 0.03
SIX3O95343 AC005702.4-201ENST00000618393 416 ntBASIC15.22■□□□□ 0.03
SIX3O95343 MIR6069-201ENST00000620069 79 ntBASIC15.22■□□□□ 0.03
SIX3O95343 LINC00628-201ENST00000628516 1289 ntBASIC15.22■□□□□ 0.03
SIX3O95343 AL033527.5-202ENST00000641632 1098 ntBASIC15.22■□□□□ 0.03
SIX3O95343 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 SNX18-202ENST00000343017 3140 ntBASIC15.22■□□□□ 0.03
SIX3O95343 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.22■□□□□ 0.03
SIX3O95343 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SIX3O95343 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 LINC00552-201ENST00000625151 2579 ntBASIC15.22■□□□□ 0.03
SIX3O95343 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.22■□□□□ 0.03
SIX3O95343 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SIX3O95343 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.21■□□□□ 0.03
SIX3O95343 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.21■□□□□ 0.03
SIX3O95343 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.21■□□□□ 0.03
SIX3O95343 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
SIX3O95343 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
SIX3O95343 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms