Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 MST1L-201ENST00000442552 2185 ntBASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 AC091951.1-201ENST00000512854 2465 ntBASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
AP4E1Q9UPM8 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 CICP11-201ENST00000434745 2827 ntBASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 AP002414.2-201ENST00000591780 3365 ntBASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 PKD1P5-201ENST00000532415 10291 ntBASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
AP4E1Q9UPM8 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 UGT1A2P-201ENST00000454886 866 ntBASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AC000095.1-201ENST00000603208 874 ntBASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AC025181.2-201ENST00000606994 802 ntBASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AL391069.4-201ENST00000609583 481 ntBASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.14■□□□□ 0.17
AP4E1Q9UPM8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 65.8 ms