Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 AC092506.1-202ENST00000401022 528 ntBASIC19.52■□□□□ 0.71
SCN11AQ9UI33 KRT18P36-201ENST00000411618 1276 ntBASIC19.52■□□□□ 0.71
SCN11AQ9UI33 SLC16A6P1-201ENST00000413214 1059 ntBASIC19.52■□□□□ 0.71
SCN11AQ9UI33 CDC23-208ENST00000505120 455 ntTSL 3 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 AC116345.2-201ENST00000512837 523 ntBASIC19.52■□□□□ 0.71
SCN11AQ9UI33 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 AC103988.2-201ENST00000561804 725 ntBASIC19.52■□□□□ 0.71
SCN11AQ9UI33 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 AC244394.1-201ENST00000435000 1665 ntBASIC19.51■□□□□ 0.71
SCN11AQ9UI33 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 AC023090.2-201ENST00000625182 2110 ntBASIC19.51■□□□□ 0.71
SCN11AQ9UI33 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 TLE1P1-201ENST00000422965 589 ntBASIC19.51■□□□□ 0.71
SCN11AQ9UI33 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 AL162426.1-201ENST00000624141 743 ntBASIC19.51■□□□□ 0.71
SCN11AQ9UI33 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SCN11AQ9UI33 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 AC125604.1-201ENST00000496255 707 ntBASIC19.5■□□□□ 0.71
SCN11AQ9UI33 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 E2F3P2-201ENST00000447755 1422 ntBASIC19.5■□□□□ 0.71
SCN11AQ9UI33 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 AC020910.5-201ENST00000623668 1865 ntBASIC19.5■□□□□ 0.71
SCN11AQ9UI33 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SCN11AQ9UI33 FXNP2-201ENST00000411625 547 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 HINT2P1-201ENST00000419438 481 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 VDAC1P1-201ENST00000439229 848 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AL596276.2-201ENST00000447525 331 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AC005962.1-201ENST00000584100 773 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 AC020658.6-201ENST00000623564 1870 ntBASIC19.49■□□□□ 0.71
SCN11AQ9UI33 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SCN11AQ9UI33 KRT8P29-201ENST00000420409 1371 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms