Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC093433.1-201ENST00000458048 571 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AC022137.2-201ENST00000503482 481 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 SNX29P1-201ENST00000548357 1007 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 RPL28-207ENST00000558815 616 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AC025181.2-201ENST00000606994 802 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AC127383.1-201ENST00000444697 1800 ntBASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLCF1Q9UBD9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 MSTO2P-201ENST00000314835 1709 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC026691.1-201ENST00000602502 2017 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ACKR1-201ENST00000368121 1240 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AL355864.2-201ENST00000447420 863 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC119751.2-201ENST00000504529 210 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AP001582.1-201ENST00000525856 295 ntBASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLCF1Q9UBD9 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 TP73-213ENST00000604479 1623 ntTSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 AL138799.1-201ENST00000448213 1675 ntBASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 AC007274.1-201ENST00000439805 662 ntBASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 BCRP2-202ENST00000447763 634 ntBASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC13.8□□□□□ -0.2
CLCF1Q9UBD9 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms