Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 REXO1L6P-201ENST00000603433 1515 ntBASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
RPAP1Q9BWH6 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 FAM86MP-201ENST00000340703 885 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 STX1A-203ENST00000395155 783 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SOCS2P1-201ENST00000417727 557 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 TDH-203ENST00000531764 1110 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 ENPP7P5-201ENST00000541031 1031 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AC087481.3-201ENST00000602886 1894 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 CTBP2P5-201ENST00000454986 1264 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AC120045.2-201ENST00000567334 178 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AL049840.4-201ENST00000602422 811 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 AC000095.1-201ENST00000603208 874 ntBASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RPAP1Q9BWH6 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 KLF2P4-201ENST00000451959 1225 ntBASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPAP1Q9BWH6 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPAP1Q9BWH6 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms