Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 UPF3AP3-201ENST00000420996 769 ntBASIC13.67□□□□□ -0.22
NKX3-1Q99801 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 AJ011931.1-201ENST00000618749 2492 ntBASIC13.67□□□□□ -0.22
NKX3-1Q99801 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX3-1Q99801 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX3-1Q99801 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ST20-AS1-201ENST00000560255 4223 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AC098859.1-201ENST00000502915 1238 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AL135744.1-201ENST00000565098 629 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 RARRES2P8-201ENST00000566335 367 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 AC027307.2-201ENST00000591252 911 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 MTDHP5-201ENST00000598980 586 ntBASIC13.66□□□□□ -0.22
NKX3-1Q99801 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
NKX3-1Q99801 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
NKX3-1Q99801 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms