Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VPS52Q8N1B4 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 RERG-209ENST00000546331 1383 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 REXO1L8P-201ENST00000604378 1897 ntBASIC16.93■□□□□ 0.3
VPS52Q8N1B4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PDIA3P1-201ENST00000471856 1510 ntBASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 CTBP2P5-201ENST00000454986 1264 ntBASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 BRI3BPP1-201ENST00000594224 787 ntBASIC16.93■□□□□ 0.3
VPS52Q8N1B4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 AL365209.1-201ENST00000624418 6473 ntBASIC16.93■□□□□ 0.3
VPS52Q8N1B4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
VPS52Q8N1B4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.92■□□□□ 0.3
VPS52Q8N1B4 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.92■□□□□ 0.3
VPS52Q8N1B4 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 FAM86MP-201ENST00000340703 885 ntBASIC16.92■□□□□ 0.3
VPS52Q8N1B4 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 KLF2P4-201ENST00000451959 1225 ntBASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AL022328.1-201ENST00000610050 478 ntBASIC16.92■□□□□ 0.3
VPS52Q8N1B4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.92■□□□□ 0.3
VPS52Q8N1B4 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms