Protein–RNA interactions for Protein: Q5XG99

LYSMD4, LysM and putative peptidoglycan-binding domain-containing protein 4, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4Q5XG99 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 MIR4722-201ENST00000578292 60 ntBASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 AC022188.1-201ENST00000620960 1664 ntBASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.12■□□□□ 0.01
LYSMD4Q5XG99 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC011676.5-201ENST00000624864 2660 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 POM121L8P-201ENST00000417732 1281 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AL354877.1-201ENST00000424412 413 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC011742.3-201ENST00000439053 820 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 POM121L9P-203ENST00000441984 1285 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC106794.1-201ENST00000506935 792 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 FGFR3P5-201ENST00000564496 886 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AL023803.2-201ENST00000620080 638 ntBASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LYSMD4Q5XG99 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 RPS2P36-201ENST00000456516 831 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 AL353726.2-201ENST00000623259 884 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 AL603764.1-201ENST00000636452 321 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 AC128714.1-201ENST00000637035 887 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 TUBBP5-203ENST00000508529 1334 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 KRT8P29-201ENST00000420409 1371 ntBASIC15.1■□□□□ 0.01
LYSMD4Q5XG99 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms